Sequence Search

  • Sequence Search Overview

    BLAST (Basic Local Alignment Search Tool): Search for proteins as well as nucleotides using a set of local alignment algorithms (BLASTn...

  • Search Sequences - BLAST

    Click My Files, and then select CAS Sequences. On the CAS Sequences page, click the New Search button. Click the BLAST tab. Import ...

  • Advanced Sequence Search - BLAST

    Automatically adjust parameters for short sequences Check this box to automatically adjust parameters in BLAST for nucleotides that ar...

  • Search Sequences - CDR

    Click My Files, and then select CAS Sequences. On the CAS Sequences page, click the New Search button. Click the CDR tab. Import ...

  • Supported Amino Acid Codes for CDR Searching

    1-Letter Code Name A Alanine B Aspartic acid or Asparagine C Cysteine D Aspartic acid E Glutamic acid F Phenylalanine ...

  • Search Sequences - Motif

    Click My Files, and then select CAS Sequences. On the CAS Sequences page, click the New Search button. Click the Motif tab. Import ...

  • Advanced Sequence Search - Motif

    Query Coverage % Minimum percentage of query that must match the subject; select 100% if the entire query should be present in sequenc...

  • Motif Sequence Searching - Symbols and Codes

    Symbols Introduces controlled variabilities into the search query. Use this symbol: When you want to: Example Possible Answers ....

  • Sequence Query Validations

    In order to simplify the input of sequence queries, STNext is introducing additional support and validation for EMBL, GenBank, and FAST...