Sequence Search
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Sequence Search Overview
BLAST (Basic Local Alignment Search Tool): Search for proteins as well as nucleotides using a set of local alignment algorithms (BLASTn...
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Search Sequences - BLAST
Click My Files, and then select CAS Sequences. On the CAS Sequences page, click the New Search button. Click the BLAST tab. Import ...
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Advanced Sequence Search - BLAST
Automatically adjust parameters for short sequences Check this box to automatically adjust parameters in BLAST for nucleotides that ar...
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Search Sequences - CDR
Click My Files, and then select CAS Sequences. On the CAS Sequences page, click the New Search button. Click the CDR tab. Import ...
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Supported Amino Acid Codes for CDR Searching
1-Letter Code Name A Alanine B Aspartic acid or Asparagine C Cysteine D Aspartic acid E Glutamic acid F Phenylalanine ...
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Search Sequences - Motif
Click My Files, and then select CAS Sequences. On the CAS Sequences page, click the New Search button. Click the Motif tab. Import ...
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Advanced Sequence Search - Motif
Query Coverage % Minimum percentage of query that must match the subject; select 100% if the entire query should be present in sequenc...
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Motif Sequence Searching - Symbols and Codes
Symbols Introduces controlled variabilities into the search query. Use this symbol: When you want to: Example Possible Answers ....
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Sequence Query Validations
In order to simplify the input of sequence queries, STNext is introducing additional support and validation for EMBL, GenBank, and FAST...