CDR Results - View Sequence Data

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Alignment

Sequence mismatches between the query and the subject are highlighted in red. Partial sequence mismatches are highlighted in yellow.

_STNext-BiosequenceResults-CDR-Misalignment.png

Patents

The Patents tab displays up to the first 10 patent documents in which the subject sequence occurs:

  • Click the Get All Patent Numbers button to get all patents found (up to 5000) from an STN file.
  • Click the Get Patent Number button to get an individual patent from an STN file.

    _STNext-MyFiles-BiosequenceSearch-Motif-Results-PatentsTab.png
    _STNext-MyFiles-BiosequenceSearch-BLAST-Results-PatentsTab-GetAllFromSTN-SelectFile.png

Note: You have the option to save the action as a script.

_STNext-MyFiles-BiosequenceSearch-Motif-Results-PatentsTab-GetAllFromSTN-SaveScript.pn.png

Journals

The Journals tab displays up to the first 10 journal documents in which the subject sequence occurs:

  • Click the Get All Accession Numbers button to get all journals found (up to 5000) from an STN file.
  • Click the Get All PubMed IDs button to get all journals found (up to 5000) from MEDLINE.
  • Click the Get Accession Number button to get an individual journal from an STN file.
  • Click the Get PubMed ID button to get an individual journal from MEDLINE.

_STNext-MyFiles-BiosequenceSearch-Motif-Results-JournalsTab.png

_STNext-MyFiles-BiosequenceSearch-BLAST-Results-JournalsTab-GetAllFromSTN-SelectFile.png _STNext-MyFiles-BiosequenceSearch-BLAST-Results-JournalsTab-GetPubMedIDs.png

Note: You have the option to save either action as a script.

_STNext-MyFiles-BiosequenceSearch-BLAST-Results-JournalsTab-GetAllFromSTN-SaveScript.png

Subject

The Subject tab displays sequence-level detail for the subject (hit) sequence to which the query aligned:

_STNext-MyFiles-BiosequenceSearch-Motif-Results-SubjectsTab-GetFrom.png

  • Sequence Length
  • CAS Registry Number®: Get registry numbers (RNs) for a particular sequence result in CAS Registry:
    • Click the Get CAS Registry Number button to get the single RN.
    • If multiple RNs, click the Get CAS Registry Numbers button to get all RNs (up to 5000).

      _STNext-MyFiles-BiosequenceSearch-CDR-Results-SubjectTab-GetFromSTN-SelectFile.png

  • GenBank Accession No: Get accession numbers for a particular sequence result:
    • Click the Get GenBank Accession Number button to get the single GenBank accession number.
    • If multiple accession numbers, click the Get GenBank Accession Nos. button to get all numbers (up to 5000).

      _STNext-MyFiles-BiosequenceSearch-CDR-Results-SubjectTab-GetGenBankAccessionNumbers.png

  • Organism: The NCBI Organism name associated with the sequence.
  • Sequence: To download the sequence in either .txt or .FASTA format, click the Download Sequence button, and then select the appropriate file type.

    _STNext-MyFiles-BiosequenceSearch-BLAST-Results-SubjectsTab-DownloadSequence.png

Note: You have the option to save either action as a script.

_STNext-MyFiles-BiosequenceSearch-BLAST-Results-SubjectTab-GetFromSTN-SaveScript.png